Right now we don't have any references from where we mention ThinLinc commands to the section that describes the commands more in detail. This makes it difficult for users to find more details about a mentioned command. We should make sure we have a cross reference system in place, just like we have for client config variables and server config variables. Note that Sphinx currently has a way to cross reference options, but not commands. We've also partly disabled the options system because we haven't described all options properly.
Options should now be fully documented as of bug 7049, so hopefully those can be cross-referenced.